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Integration with LLM Tools​

By leveraging appropriate embedding models, each study can be projected into a high-dimensional space to enable content-based similarity assessments. This capability helps identify collaborators, competitors, and research overlaps.

 

UMAP Visualization of scRNA-seq Studies

Personalized Messaging​

Using prompt engineering, we can generate automated, topic-specific messages. It is possible to include a substantial amount of scientific context, but here is a simpler, zero-shot example:

Subject: Enhancing Your Research on Intestinal Treg Functions

Dear Dr. Researcher,

I recently had the opportunity to delve into your compelling research on immune microniches shaping intestinal Treg function. Your innovative approach using in vivo live imaging alongside photo-activation-guided single-cell RNA sequencing and spatial transcriptomics offers a remarkable view into the interaction dynamics within the intestinal lamina propria.

At Genomics, we specialize in advanced sequencing capabilities and comprehensive bioinformatics solutions. We would be thrilled to discuss how our services can support and expand the capabilities of your research.

Best regards,
John Polymerase
Genomics

This simple example looks laughable given the current state of technology, and obviously would never be deployed as it is. But considering that this is a zero-shot example done more than a year ago, it hints at the power of such tools to automate repetitive, time-consuming tasks, while technical and personalized.

Data-Driven Insights for Research and Innovation​

By linking structured metadata and similarity analysis with LLMs, this system enables:

  • Researcher and Method Mapping – Identify experts working with specific sequencing methods, grouped by subject and location.
  • Study Discovery and Classification – Retrieve studies using MeSH terms, keywords, and methodological criteria.
  • Trend and Network Analysis – Track research activity across journals, topics, and geographies; map collaboration networks.
  • Strategic Insights and Forecasting – Support funding, infrastructure, and talent planning through global trend analysis and expenditure forecasting.